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Developing new SSR markers from ESTs of pea (Pisum sativum L.)

摘要The development of expressed sequence tags (ESTs) from pea has provided a useful source for mining novel simple sequence repeat (SSR) markers. In the present research, in order to find EST-derived SSR markers,18552 pea ESTs from the National Center for Biotechnology Information (NCBI) database were downloaded and assembled into 10086 unigenes. A total of 586 microsatellites in 530 unigenes were identified, indicating that merely 5.25% of sequences contained SSRs. The most abundant SSRs within pea were tri-nucleotide repeat motifs, and among all the tri-nucleotide repeats, the motif GAA was the most abundant type. In total, 49 SSRs were used for primer design. EST-SSR loci were subsequently screened on 10 widely adapted varieties in China. Of these, nine loci showed polymorphic profiles that revealed two to three alleles per locus. The polymorphism information content value ranged from 0.18 to 0.58 with an average of 0.41. Furthermore, transferable analysis revealed that some of these loci showed transferability to faba bean. Because of their polymorphism and transferability, these nine novel EST-SSRs will be valuable tools for marker-assisted breeding and comparative mapping of pea in the future.

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分类号 S18
DOI 10.1631/jzus.B1000004
发布时间 2011-06-06(万方平台首次上网日期,不代表论文的发表时间)
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浙江大学学报(英文版)(B辑:生物医学和生物技术)

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