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RGB imaging and computer vision-based approaches for identifying spike number loci for wheat

摘要The spike number(SN)is an important trait that significantly impacts grain yield in wheat.Manual counting of SN is time-consuming,hindering large-scale breeding efforts.Hence,there is an urgent need to develop efficient and accurate methodologies for SN counting.A YOLOX algorithm was used to determine the optimal growth stage for developing wheat spike detection models among recombinant inbred lines(RILs)across Zhongmai 175 × Lunxuan 987 and a diverse panel of 166 cultivars.We subsequently increased the precision of spike identi-fication by developing a new YOLOX-P algorithm that incorporates the convolutional block attention module and increasing the resolution of the input images.We also used these SN data to identify underlying loci in the Zhongmai 578 × Jimai 22 RIL population.The results revealed that the late grain-filling stage presented the highest precision among the SN detection models,with accuracies ranging from 91.8 to 95.02%.The improved YOLOX-P algorithm demonstrated higher mean average precision scores(5.30-5.99%)and F1 scores(0.06)than did the YOLOX algorithm when it was applied to the same subsets.Three new SN loci,namely,QSN.caas-4A2,QSN.caas-4D and QSN.caas-5B2,were identified using the 50k SNP arrays.Two kompetitive allele-specific PCR markers linked with QSN.caas-4A2 and QSN.caas-5B2 were developed,and their genetic effects were validated in a diverse panel of 166 cultivars.These findings provide useful tools for high-throughput identifi-cation of SNs and novel loci in wheat.

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作者 Lei Li [1] Muhammad Adeel Hassan [2] Duoxia Wang [3] Guoliang Wan [3] Sahila Beegum [4] Awais Rasheed [5] Xianchun Xia [3] Yong He [6] Yong Zhang [7] Zhonghu He [8] Jindong Liu [7] Yonggui Xiao [3] 学术成果认领
作者单位 State Key Laboratory of Crop Gene Resources and Breeding,Institute of Crop Sciences,National Wheat Improvement Centre,Chinese Academy of Agricultural Sciences(CAAS),Beijing,100081,China;Zhongyuan Research Center,Chinese Academy of Agricultural Sciences,Xinxiang,453519,China;Institute of Environment and Sustainable Development in Agriculture,Chinese Academy of Agricultural Sciences,Beijing,100081,China [1] Adaptive Cropping System Laboratory,USDA-ARS,Beltsville,MD,20705,USA;Oak Ridge Institute for Science and Education,Oak Ridge,TN,37830,USA [2] State Key Laboratory of Crop Gene Resources and Breeding,Institute of Crop Sciences,National Wheat Improvement Centre,Chinese Academy of Agricultural Sciences(CAAS),Beijing,100081,China [3] Adaptive Cropping System Laboratory,USDA-ARS,Beltsville,MD,20705,USA;Nebraska Water Center,Robert B.Daugherty Water for Food Global Institute,2021 Transformation Drive,University of Nebraska,Lincoln,NE,68588,USA [4] State Key Laboratory of Crop Gene Resources and Breeding,Institute of Crop Sciences,National Wheat Improvement Centre,Chinese Academy of Agricultural Sciences(CAAS),Beijing,100081,China;Department of Plant Sciences,Quaid-i-Azam University Islamabad,Pakistan;International Maize and Wheat Improvement Centre(CIMMYT)China Office,c/o CAAS,Beijing,100081,China [5] Institute of Environment and Sustainable Development in Agriculture,Chinese Academy of Agricultural Sciences,Beijing,100081,China [6] State Key Laboratory of Crop Gene Resources and Breeding,Institute of Crop Sciences,National Wheat Improvement Centre,Chinese Academy of Agricultural Sciences(CAAS),Beijing,100081,China;Zhongyuan Research Center,Chinese Academy of Agricultural Sciences,Xinxiang,453519,China [7] State Key Laboratory of Crop Gene Resources and Breeding,Institute of Crop Sciences,National Wheat Improvement Centre,Chinese Academy of Agricultural Sciences(CAAS),Beijing,100081,China;International Maize and Wheat Improvement Centre(CIMMYT)China Office,c/o CAAS,Beijing,100081,China [8]
栏目名称
DOI 10.1016/j.plaphe.2025.100051
发布时间 2025-08-14(万方平台首次上网日期,不代表论文的发表时间)
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植物表型组学(英文)

植物表型组学(英文)

2025年7卷2期

239-251页

SCIMEDLINECSCDCABP

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