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Conserved noncoding sequences correlate with distant gene contacts in Arabidopsis and Brassica

摘要Physical contact between genes distant on chro-mosomes is a potentially important way for genes to coordinate their expressions.To investigate the potential importance of distant contacts,we per-formed high-throughput chromatin conformation capture(Hi-C)experiments on leaf nuclei isolated from Brassica rapa and Brassica oleracea.We then combined our results with published Hi-C data from Arabidopsis thaliana.We found that distant genes come into physical contact and do so preferentially between the proximal promoter of one gene and the downstream region of another gene.Genes with higher numbers of conserved noncoding sequences(CNSs)nearby were more likely to have contact with distant genes.With more CNSs came higher numbers of transcription factor binding sites and more histone mod-ifications associated with the activity.In addition,for the genes we studied,distant contacting genes with CNSs were more likely to be transcriptionally coordinated.These observations suggest that CNSs may enrich active histone modifications and recruit transcription factors,correlating with dis-tant contacts to ensure coordinated expression.This study advances our knowledge of gene con-tacts and provides insights into the relationship between CNSs and distant gene contacts in plants.

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作者 Lei Zhang [1] Jian Wu [1] Jianli Liang [1] Runmao Lin [1] Chao Sun [2] Qirui Dai [1] Lupeng Zhang [1] Huiling Guo [1] Ranze Zhao [1] Xiaowu Wang [1] 学术成果认领
作者单位 State Key Laboratory of Vegetable Biobreeding,Institute of Vegetables and Flowers,Chinese Academy of Agricultural Sciences,Beijing 100081,China [1] Research Institute of Forestry,Chinese Academy of Forestry,Beijing 100091,China [2]
DOI 10.1111/jipb.13465
发布时间 2023-08-02(万方平台首次上网日期,不代表论文的发表时间)
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植物学报(英文版)

植物学报(英文版)

2023年65卷6期

1467-1478页

SCIMEDLINEISTICCSCDCABP

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